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Field
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Description
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n=
k
;
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|
Number of segments in the model. If n>1, the model is chimeric. If n=?, the model is too far diverged from the query sequence for parsimony to be reliable. The divergence is measured using the divqm field (see below). The -uparse_annot_maxdivqm option specifies the maximum allowed divergence; default is 1.0.
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diffsqm=
d
;
|
|
Number of differences between the query sequence and model. A difference is a substitution or indel (one gap symbol). If diffsqm=0, this indicates the model is identical to the query. If diffsqm>0, this is interpreted as due to point errors (sequencing error or PCR copying mistakes).
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dqt=
d;
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Divergence between query and top hit in the database as a percentage, calculated as 100% - PctId(Query, TopHit).
Sequence identity
is calculated from a global alignment.
|
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dqm=
d
;
|
|
Divergence between query and model, as a percentage, calculated as 100% - PctId(Query, Model).
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top=
label
;
|
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Label of database top hit.
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parents=
string
;
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Included only if the model is chimeric. The string specifies the segments used to construct the model. Each segment is specified as
label
(
from
-
to
), where
from
and
to
are the 1-based coordinates.
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