USEARCH home
Documentation
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Commands
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Documentation
Getting started
Installation
Command line
Command reference
All commands
Parameters and options
Output files for search and clustering
Accept options (which hits to report)
Termination options (when to stop searching)
Alignment heuristics
Alignment parameters (gap penalties etc.)
Sequence database index parameters
OTU and denoising analysis for 16S, ITS etc.
Recommended procedures
Example scripts and tutorials
Publications
Papers and how to cite USEARCH
