See also
OTU / denoising pipeline
Generating an OTU table
Commands which support generating OTU tables understand the following options. The most commonly used commands are otutab and closed_ref .
-mapout
filename
Tab-separated text file which maps reads to OTUs.
There is one read per line with two fields: the read label and the OTU identifier.
-otutabout
filename
QIIME classic tabbed text format
.
-biomout
filename
BIOM v1.0 format (JSON)
. The
biom utility
can be used to convert to
BIOM v2.1 format (HDF5)
.
-mothur_shared_out
filename
Mothur "shared" file
.